PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010238

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 306aa MW: 33141.5 Da PI: 7.8781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010238	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + Lus10010238 11 KGPWSPEEDEALQRLVQTYGPRNWTLISKSIP-GRSGKSCRLRWCNQ 56 79****************************.*********985 PP
2	Myb_DNA-binding	59.3	8.4e-19	65	107	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++++a++++G++ W+tIar ++ gRt++++k++w++ Lus10010238 65 PFTPEEDDIIIKAHARFGNK-WATIARLLN-GRTDNSIKNHWNST 107 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.192	6	57	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-33	8	104	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-17	10	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-18	11	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-26	12	64	IPR009057	Homeodomain-like
CDD	cd00167	2.91E-16	13	55	No hit	No description
PROSITE profile	PS51294	25.685	58	112	IPR017930	Myb domain
SMART	SM00717	4.7E-16	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-16	65	107	IPR001005	SANT/Myb domain
CDD	cd00167	4.97E-13	65	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-24	65	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAASKETDRI KGPWSPEEDE ALQRLVQTYG PRNWTLISKS IPGRSGKSCR LRWCNQLSPE 60 VEHRPFTPEE DDIIIKAHAR FGNKWATIAR LLNGRTDNSI KNHWNSTLKR KCDGTTSLAE 120 QPPLKRSASL GAGSNFSGLY LNPSSPSGSD LSDSSLHGND SSSPVYRPLA RTASLIPPTL 180 SMDVSSSIRD PLTSLSLSLP GSDLPETLDA GSALGLCALP AAPVAASPPN AVTVEQQAPI 240 MQEKAEVGLE KQMFNPEFLG VMQEMIRKEV RSYMSGIEKK GLCFQAESIG NAVVERIGIT 300 RSRIE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-42	10	112	3	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-42	10	112	3	105	C-Myb DNA-Binding Domain
1msf_C	5e-42	10	112	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU829865	1e-128	EU829865.1 Linum usitatissimum clone LU0013B04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302428.2	1e-148	hypothetical protein POPTR_0002s12410g, partial
Swissprot	Q9FDW1	8e-87	MYB44_ARATH; Transcription factor MYB44
TrEMBL	A0A067KZQ6	1e-148	A0A067KZQ6_JATCU; MYB family protein
TrEMBL	B9GNT0	1e-148	B9GNT0_POPTR; Uncharacterized protein (Fragment)
STRING	POPTR_0002s12410.1	1e-147	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF843	34	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-73	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Lus10010238